Assemble bacterial isolate genomes from Nanopore reads
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
shortreads
:file
Optional. List of FastQ files of short reads (paired-end data) that will be used to polish the draft genome.
*.fastq.gz
longreads
Input Nanopore FASTQ file
contigs
*.fa
The final assembly produced by Dragonflye
log
dragonflye.log
Full log file for bug reporting
raw_contigs
{flye,miniasm,raven}.fasta
Raw assembly produced by the assembler (Flye, Miniasm, or Raven)
gfa
{flye,miniasm,raven}-unpolished.gfa
Assembly graph produced by Miniasm, or Raven
txt
flye-info.txt
Assembly information output by Flye
versions
versions.yml
File containing software versions
Microbial assembly pipeline for Nanopore reads
